PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_17500V3.2.p
Common NamePHYPADRAFT_141686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YB
Protein Properties Length: 155aa    MW: 16664.8 Da    PI: 4.5806
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_17500V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB72.56.8e-231096490
               NF-YB  4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                        +d  lP a +++i+k++lP + +++kda++++ ec +efi +++se+++ c +e+++ti+++ +l al  lGf +y+ +++  ++++
  Pp3c10_17500V3.2.p 10 DDVSLPKATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESNEICSKEEKRTIAPEHVLRALEILGFGEYMGEVQGAFEQH 96
                        6889*************************************************************************9987666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-378140IPR009072Histone-fold
SuperFamilySSF471132.02E-3310139IPR009072Histone-fold
PfamPF008088.7E-221377IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDTAAGRPKD DVSLPKATMT KIIKEMLPPD VRVAKDAQDL LVECCVEFIN LISSESNEIC  60
SKEEKRTIAP EHVLRALEIL GFGEYMGEVQ GAFEQHKNET LESPKVGGRW AKEGGGGMTE  120
EEAIAAQQRM FAEARARMNS AGAPAPSAQA NDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-381013512133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001774769.11e-111predicted protein
SwissprotP495924e-70NC2B_ARATH; Protein Dr1 homolog
TrEMBLA9T7Z61e-111A9T7Z6_PHYPA; Predicted protein
STRINGPP1S181_25V6.19e-98(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-71nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]